Total Citation - Google Scholar
A. Book Chapter
1) Kadowaki, M and Karim, M.R. "Cytosolic LC3 ratio as a quantitative index of macroautophagy" in Methods in Enzymology-Autophagy in Mammalian Systems, Part B, Volume 452, Chapter 13, 2009, pp. 199-213, Academic Press (Elsevier Inc.) Abstract
B. Published Papers
1) Karim MR, Liao E, Kim J, Meints J, Martinez HM, Pletnikovab O, Troncosob JC, and Lee MK. α-synucleinopathy associated c-Abl activation causes p53-dependent autophagy impairment. Mol Neurodegener. 2020 Apr 16;15(1):27.
2) Karim MR, Fisher CR, Kapphahn RJ, Polanco JR, Ferrington DA. Investigating AKT activation and autophagy in immunoproteasome-deficient retinal cells. PLoS One. 2020 Apr 10; 15 (4): e0231212.
3) Karim, M.R. and Kadowaki M. Effect and proposed mechanism of vitamin C modulating amino acid regulation of autophagic proteolysis. Biochimie, 2017 Nov;142: 51-62
4) Klionsky, D.J., Abdelmohsen, K., Abe, A., Abedin, M.J., Abeliovich, H., Arozena, A. A., Adachi, H., ………Karim, M.R., Karmakar, P., Kaser, A. et al., (2016) Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy, 12(1):1-222.
5) Iizuka, Y., Cichocki, F., Sieben, A., Sforza, F., Karim, R., Coughlin, K., Isaksson Vogel, R., Gavioli, R., McCullar, V., Lenvik, T., Lee, M., Miller, J., Bazzaro, M. (2015) UNC-45A is a nonmuscle myosin IIA chaperone required for NK cell cytotoxicity via control of lytic granule secretion. The Journal of Immunology, J Immunol 1500979.
6) Karim, M.R., Kawanago, H. and Kadowaki M. (2014) A quick signal of starvation induced autophagy: Transcription versus post-translational modification of LC3.Analytical Biochemistry, 465:28-34.
7) Angcajas, A.B., Hirai, N., Kaneshiro, K., Karim, M.R., Horii, Y., Kubota, M., Fujimura S. and Kadowaki M. (2014) Diversity of amino acid signaling pathways on autophagy regulation in rat hepatoma H4-II-E cells: A novel pathway for arginine. Biochemical and Biophysical Research Communications, 446(1):8-14.
8) Karim, M.R., Fujimura, S., Kadowaki, M. (2010) Vitamin E as a novel enhancer of macroautophagy in rat hepatocytes and H4-II-E cells. Biochemical and Biophysical Research Communication, 394(4):981-987. Abstract
9) Karim, M.R., Kaneshiro, K., Kawanago, H. and Kadowaki, M. (2009) Basic mechanism and nutritional regulation of autophagy. Special issue of Bulletin of the Faculty of Agriculture, Niigata University, Proceedings of The 3rd Int. Symposium “Sustainability in Food Production, Agriculture and Environment in Asia”, pp.1-13.
10) Karim, M.R., Kanazawa, T., Daigaku, Y., Fujimura, S., Miotto, G. and Kadowaki, M. (2007) “Cytosolic LC3 Ratio as A Sensitive Index of Macroautophagy in Isolated Rat Hepatocytes And H4-II-E Cells". Autophagy, 3 (6), pp. 553-560 Abstract; Full Text
11) Kadowaki, M., Karim, M.R., Carpi, A. and Miotto, G. (2006) Nutrient Control of Macroautophagy in Mammalian Cells. Molecular Aspects of Medicine, 27, pp. 426-443 Abstract;Full Text
12) Kadowaki, M., Karim, M.R. and Tadaki, A. (2006) Stimulatory Effect of Antioxidants on Macroautophagy in Isolated Rat Hepatocytes”. Hissu Amino San Kenkyu (Japanese), 175, pp. 54-58
13) Kadowaki, M and Karim, M.R. (2005) Enhancement of autophagy by nutrition. Giornale di Gerontologia 53 (1), pp. 43-44 (Short Communication) Abstract
14) Karim, M.R., Choudhury, M.A., Kibria, G., and Rahman, M.H. (2000) "Crude fibre and TF-TR content in Bangladesh tea and their industrial significance". Tea Journal of Bangladesh, 36 (I & II), pp. 38-45 Abstract
15) Rahman, M.H., Karim, M.R., and Hassan, P. (2000) Some Physico-Chemical Attributes in the Silkworm Waste Pupae, Univ.J. Zool., Rajshahi Univ., Vol.19, pp. 37-41 Abstract
16) Karim, M.R., Rahman, M.H., Hassan, P., and Absar, N. (1999) Purification, Sub-unit structure and some characteristics of three silkworm protein from Bombyx mori L., Bangladesh Journal of Biochemistry, Vol. 5, pp.15-24 Abstract
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Conference Abstract/Oral or Poster Presentation:
Poster Presentation
01) Karim M.R., Liao E. and Lee M.K. α-synucleinopathy associated c-Abl activation causes p53-dependent autophagy impairment. Neuroscience 2019 (SFN), October 19-23, 2019. McCormick Place, Chicago, USA. No. 295.04
02) Karim M.R. and Ferrington D.A. Activation of Akt/mTOR signaling and autophagy impairment in immunoproteasome-deficient cells. Gordon Research Symposium (GRS), Lysosomes and Endocytosis (Endosomes, Lysosomes, and Trafficking in Health and Disease), June 16-17, 2018. Proctor Academy, Andover, New Hampshire, US.
03) Karim, M.R. and Ferrington, D.A. Immunoproteasome deficiency alters autophagy flux. American Aging Association 46th Annual Meeting, June 09-12, 2017. New York, USA. Awarded for Travel Grant.
04) Karim, M.R. and Ferrington, D.A. Reduced autophagy in immunoproteasome knock out cells. Gordon Research Conference, Oxidative Stress & Disease, March 19-24, 2017. Il Ciocco, Barga, Italy. Awarded for Travel Grant, but declined by author due to unavoidable situation.
05) Karim, M.R., Liao, E., Lee, M.K. p53 dependent regulation of autophagy by c-Abl in Parkinson’s Disease. Neuroscience 2015 (SFN), October 17-21, 2015. Chicago, USA. No. 41.22 http://sfn15.hubbian.com/id_9763/
06) Karim, M.R., Barnes, J.E., Lee, M.K. Alpha-synucleinopathy in Transgenic Mouse Model is associated with impaired autophagy and lysosome function. Neuroscience 2014 (SFN), November 15-19, 2014. Washington DC, USA. No. 411.16. http://sfn14.hubbian.com/id_16249/
07) Karim, M.R., Kim, J.S. and Behrns, K.E. Starvation and rapamycin mediated autophagy response in normal and cirrhotic mouse hepatocytes. 7thAnnual symposium, Department of Surgery research day; 12thApril, 2011; University of Florida, USA. No. 720.
08) Karim, M.R., Kim, J.S. and Behrns, K.E. Role of autophagy in normal and carbon tetrachloride-induced cirrhotic mouse hepatocytes. 2011 Celebration of Research Program, The College of Medicine; 14th March, 2011; University of Florida, USA. No. 147, p 20.
09) Karim, M.R., Fujimura, S. and Kadowaki, M. Nutritional regulation of autophagy: Stimulation and a new function of vitamin E. 5th International Symposium on Autophagy, September 24-28, 2009. Otsu, Japan. Autophagy 5(6), 2009, No. 21, p 914.
10) Karim, M.R., Fujimura, S. and Kadowaki, M. An aging study of autophagy in freshly isolated hepatocytes of Wistar/ST Rat. 7th Surugadai International Symposium “Cell Death, Autophagy, Cellular Senescence and their Roles in Diseases”, November 16-18, 2008. Tokyo Medical and Dental University, Japan. Proceedings Abstracts, No. 43, p 29.
11) Karim, M.R., Fujimura, S. and Kadowaki, M. Autophagy and aging: The role of vitamin C in rat hepatocytes. The 9th International Congress on Cell Biology (ICCB 2008), October 07-10, 2008. COEX, Seoul, Korea. Congress Proceedings Abstracts, No. P1-10, p 225.
12) Karim, M.R., Daigaku, Y, Fujimura, S. and Kadowaki, M. Cytosolic LC3 ratio, a promising index of macroautophagy formation in isolated rat hepatocytes and H4-II-E cells. 4th International Symposium on Autophagy, October 01-05, 2006. Shizuoka, Japan. Autophagy (2), 2006 (Poster Presentation Abstracts), No. 36, p 357.
13) Karim, M.R., Fujimura, S. and Kadowaki, M. Cytosolic LC3 ratio, a new index of macroautophagy formation. 20th IUBMB Congress, June 18-23, 2006. Kyoto, Japan. Proceedings (ABSTRACTS), No. 5P-A-163, p 707.
14) Karim, M.R., Fujimura, S. and Kadowaki, M. Autophagic proteolysis: Vitamin C enhances autophagy and LC3 modification in the cytosolic fraction of rat hepatocytes. The 1st International symposium, Food Production and Environmental Conservation in East Asia, September 13-15, 2005, Faculty of Agriculture, Niigata University, Japan. Proceedings (ABSTRACTS), No. PII-12, p 86.
15) Karim, M.R., Fujimura, S. and Kadowaki, M. Vitamin C acutely enhances autophagic proteolysis at the formation step in rat hepatocytes. Gordon Research Conference, Autophagy in Stress, Development and Disease, April 24-29, 2005. Il Ciocco, Barga, Italy.
Oral Presentation
01) Karim, M.R. and Liao, E. p53 dependent regulation of autophagy by c-Abl in Parkinson’s Disease. Institute for Translational Neuroscience (ITN) Research Conference; 12th May, 2015; WMBB 3-143, University of Minnesota.
02) Karim, M.R., Fujimura, S. and Kadowaki, M. Nutrient-induced autophagy: The role of vitamin E in rat and human liver cells. 19th International Congress of Nutrition, October 04-09, 2009. BITEC, Bangkok, Thailand. Proceedings (ABSTRACTS), No. OR25-8, p 108. Awarded for Travel Grant.
03) Karim, M.R., Fujimura, S. and Kadowaki, M. Basic mechanism and nutritional regulation of autophagy. The 3rd International symposium, Sustainability in Food Production, Agriculture and the Environment in Asia, Sept 28-Oct 01, 2009, Faculty of Agriculture, Niigata University, Japan. Proceedings (ABSTRACTS), No. O-27, p 56.
04) Karim, M.R. and Kadowaki, M. The role of tocopherols and tocotrienols on autophagy regulation. 6thJapanese Tocotrienol Society Meeting; 17thNovember, 2009; Kobe University, Japan [Invited Speaker]
05) Karim, M.R., Hanif, R., Takahashi, N., Fujimura, S. and Kadowaki, M. Vitamins and antioxidants: A positive and negative regulation in autophagy. 63rd Annual Meeting, JSNFS, Brick Hall,Nagasaki, Japan, May 20-23, 2009, p 120. [Selected abstract for Press Conference of the Nutrition Society]
06) Karim, M.R., Fujimura, S. and Kadowaki, M. A Possible Signaling Mechanism of Vitamin C to Enhance Macroautophagy. 81st and 31st Annual Meeting, BMB (Biochemistry and Molecular Biology Society of Japan), Kobe, Japan, December 09-12, 2008, Proceedings Abstracts, No. 4P-0649, p 768,
07) Karim, M.R., Takahashi, N., Kaneshiro, K., Fujimura, S. and Kadowaki, M. Effect and possible mechanism of a-tocopherol on autophagic proteolysis in isolated hepatocytes. 62nd Annual Meeting, JSNFS, Joshi Eiyou Daigaku, Saitama, Japan, May 2-4, 2008, p 233.
08) Karim, M.R., Miyake, N., Kurata, T., Fujimura, S. and Kadowaki, M. Ascorbic acid does not require the uptake into the cell to control autophagy in ODS rats. 61st Annual Meeting, JSNFS, Kyoto Int. Conference Hall, Japan, May 17-20, 2007, p 123.
09) Karim, M.R., Miyake, N., Kurata, T., Fujimura, S. and Kadowaki, M. Possible mode of action of vitamin C in autophagic proteolysis. 60th Annual Meeting, JSNFS, Shizuoka University, Japan, May 19-21, 2006, p 280.
10) Karim, M.R., Fujimura, S. and Kadowaki, M. The Cytosolic LC3 ratio as a sensitive index for autophagy formation. Annual Meeting, JSBBA (Japan Society for Bioscience, Biotechnology, and Agro chemistry), Kyoto Women’s University, Kyoto, Japan, March 25~28, 2006, p 127.
11) Karim, M.R., Fujimura, S. and Kadowaki, M. Vitamin C and E enhance autophagic proteolysis in rat hepatocytes. 59th Annual Meeting, JSNFS (Japanese Society of Nutrition and Food Science), Tokyo Agricultural University, Japan, May 12-15, 2005, p 132.